@article {3727,
	title = {110 mu m thin endo-microscope for deep-brain in vivo observations of neuronal connectivity, activity and blood flow dynamics},
	journal = {NATURE COMMUNICATIONS},
	volume = {14},
	year = {2023},
	month = {APR 5},
	pages = {1897},
	keywords = {KF, MF},
	doi = {10.1038/s41467-023-36889-z},
	author = {Stib{\r u}rek, Miroslav and Ondr{\'a}{\v c}kov{\'a}, Petra and Tuckova, Tereza and Turtaev, Sergey and {\v S}iler, Martin and Pik{\'a}lek, Tom{\'a}{\v s} and J{\'a}kl, Petr and Gomes, Andre and Krejci, Jana and Kolbabkova, Petra and Uhlirova, Hana and Cizmar, Tomas}
}
@article {3754,
	title = {Synchronization of spin-driven limit cycle oscillators optically levitated in vacuum},
	journal = {Nature Communications},
	volume = {14},
	year = {2023},
	pages = {5441},
	keywords = {LF, MF},
	doi = {10.1038/s41467-023-41129-5},
	url = {https://doi.org/10.1038/s41467-023-41129-5},
	author = {Brzobohat{\'y}, Oto and Ducha{\v n}, Martin and J{\'a}kl, Petr and Je{\v z}ek, Jan and {\v S}iler, Martin and Zem{\'a}nek, Pavel and Simpson, Stephen H.}
}
@article {3503,
	title = {Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References},
	journal = {Photonics},
	volume = {9},
	year = {2022},
	pages = {37},
	keywords = {BF, KF, MF},
	doi = {10.3390/photonics9010037},
	url = {https://www.mdpi.com/2304-6732/9/1/37},
	author = {J{\'a}kl, Petr and {\v S}iler, Martin and Je{\v z}ek, Jan and Cifuentes, Angel and Tr{\"a}g{\r a}rdh, Johanna and Zem{\'a}nek, Pavel and Cizmar, Tomas}
}
@article { ArzolaSR19,
	title = {Spin to orbital light momentum conversion visualized by particle trajectory},
	journal = {Sci. Rep.},
	volume = {9},
	year = {2019},
	pages = {4127:1-7},
	keywords = {LF, MF},
	doi = {10.1038/s41598-019-40475-z},
	author = {Alejandro V. Arzola and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and P. Zem{\'a}nek}
}
@article {SilerPRL18,
	title = {Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems},
	journal = {Phys. Rev. Lett.},
	volume = {121},
	year = {2018},
	pages = {23601},
	keywords = {LF, MF},
	doi = {10.1103/PhysRevLett.121.230601},
	author = {M {\v S}iler and Ornigotti, L. and Oto Brzobohat{\'y} and P J{\'a}kl and Artem Ryabov and Holubec, V. and P. Zem{\'a}nek and Radim Filip}
}
@article {SvakNC18,
	title = {Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap},
	journal = {Nature Commun.},
	volume = {9},
	year = {2018},
	pages = {5453},
	keywords = {LF, MF},
	doi = {10.1038/s41467-018-07866-8},
	author = {Vojtech Svak and Oto Brzobohat{\'y} and M {\v S}iler and P J{\'a}kl and J. Ka{\v n}ka and P. Zem{\'a}nek and S. H. Simpson}
}
@article { ArzolaPRL17,
	title = {Omnidirectional Transport in Fully Reconfigurable Two Dimensional Optical Ratchets},
	journal = {Phys. Rev. Lett.},
	volume = {118},
	year = {2017},
	pages = {138002},
	keywords = {LF, MF},
	doi = {10.1103/PhysRevLett.118.138002},
	author = {Alejandro V. Arzola and Villasante-Barahona, Mario and Karen Volke-Sep{\'u}lveda and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { SilerSR17,
	title = {Thermally induced micro-motion by inflection in optical potential},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {1697},
	keywords = {LF, MF},
	issn = {2045-2322},
	doi = {10.1038/s41598-017-01848-4},
	author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and Artem Ryabov and Radim Filip and P. Zem{\'a}nek}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	keywords = {MF},
	doi = {10.1364/OL.41.000870},
	author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article { TomoriJOpt16,
	title = {Holographic Raman tweezers controlled by Multimodal Natural User Interface},
	journal = {J. Opt.},
	volume = {18},
	year = {2016},
	pages = {015602:1-9},
	keywords = {MF},
	doi = {10.1088/2040-8978/18/1/015602},
	author = {Z. Tomori and P. Ke{\v s}a and M. Nikorovi{\v c} and J. Ka{\v n}ka and P J{\'a}kl and M. {\v S}er{\'y} and Silva Bernatov{\'a} and E. Valu{\v s}ov{\'a} and M. Antal{\'\i}k and P. Zem{\'a}nek}
}
@article { ZemanekJOpt16,
	title = {Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry},
	journal = {Journal of Optics},
	volume = {18},
	number = {6},
	year = {2016},
	pages = {065402},
	keywords = {MF},
	doi = {10.1088/2040-8978/18/6/065401},
	author = {P. Zem{\'a}nek and M {\v S}iler and Oto Brzobohat{\'y} and P J{\'a}kl and Radim Filip}
}
@article { BrzobohatyOE15b,
	title = {Complex rotational dynamics of multiple spheroidal	particles in a circularly polarized, dual beam trap},
	journal = {Opt. Express},
	volume = {23},
	year = {2015},
	pages = {7273-7287},
	keywords = {MF},
	doi = {10.1364/OE.23.007273},
	author = {Oto Brzobohat{\'y} and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and S. H. Simpson and P. Zem{\'a}nek}
}
@article { JaklOE14,
	title = {Optical sorting of nonspherical and living microobjects in moving interference structures},
	journal = {Opt. Express},
	volume = {22},
	year = {2014},
	pages = {29746-29760},
	keywords = {MF},
	doi = {10.1364/OE.22.029746},
	author = {P J{\'a}kl and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Karen Volke-Sep{\'u}lveda and P. Zem{\'a}nek}
}
@article { ArzolaOE14,
	title = {Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles},
	journal = {Opt. Express},
	volume = {22},
	year = {2014},
	pages = {16207-16221},
	keywords = {MF},
	doi = {10.1364/OE.22.016207},
	author = {Alejandro V. Arzola and P J{\'a}kl and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	keywords = {MF},
	doi = {10.3390/molecules181113188},
	author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { TomoriOPJ13,
	title = {Holographic Raman tweezers controlled by hand gestures and voice commands},
	journal = {Optics and Photonics Journal},
	volume = {3},
	year = {2013},
	pages = {331-336},
	keywords = {MF},
	doi = {10.4236/opj.2013.32B076},
	author = {Z. Tomori and M. Antal{\'\i}k and P. Ke{\v s}a and J. Ka{\v n}ka and P J{\'a}kl and M. {\v S}er{\'y} and Silva Bernatov{\'a} and P. Zem{\'a}nek}
}
@article { BrzobohatyOL13,
	title = {Optical manipulation of aerosol droplets using a	holographic dual and single beam trap},
	journal = {Opt. Lett.},
	volume = {38},
	number = {22},
	year = {2013},
	pages = {4601-4604},
	keywords = {MF},
	doi = {10.1364/OL.38.004601},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { SilerOE12,
	title = {Optical forces induced behavior of a particle in a non-diffracting vortex beam},
	journal = {Opt. Express},
	volume = {20},
	year = {2012},
	pages = {24304-24319},
	keywords = {MF},
	doi = {10.1364/OE.20.024304},
	author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { JaklAPL08,
	title = {Static optical sorting in a laser interference field},
	journal = {Appl. Phys. Lett.},
	volume = {92},
	number = {16},
	year = {2008},
	pages = {161110:1{\textendash}3},
	keywords = {MF},
	issn = {0003-6951},
	doi = {10.1063/1.2913759},
	author = {P J{\'a}kl and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M. {\v S}er{\'y} and P. Zem{\'a}nek}
}
@article { JaklJOPAA07,
	title = {Axial optical trap stiffness influenced by retro-reflected beam},
	journal = {J. Opt. A: Pure Appl. Opt.},
	volume = {9},
	number = {8, Sp. Iss. SI},
	year = {2007},
	pages = {S251{\textendash}S255},
	keywords = {MF},
	issn = {1464-4258},
	doi = {10.1088/1464-4258/9/8/S19},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka and P. Zem{\'a}nek}
}
@article { JaklJOAM07,
	title = {Opto-fluidic micromanipulation system based on integrated polymer waveguides},
	journal = {J. Optoel Adv. Mater.},
	volume = {9},
	year = {2007},
	pages = {2148-2151},
	keywords = {MF},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and P. Zem{\'a}nek and Ormos, P. and Valkai, S. and Kelemen, L.}
}
@article {JaklJMO03,
	title = {Behaviour of an optically trapped probe approaching a dielectric interface},
	journal = {J Mod. Optics},
	volume = {50},
	year = {2003},
	pages = {1615-1625},
	keywords = {MF},
	doi = {10.1080/09500340308235235},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and A. Jon{\'a}{\v s} and M. Li{\v s}ka and P. Zem{\'a}nek}
}
@article {ZemanekOPTCOMM03,
	title = {Theoretical comparison of optical traps created by standing wave and single beam},
	journal = {Opt. Commun.},
	volume = {220},
	year = {2003},
	pages = {401-412},
	keywords = {MF},
	doi = {10.1016/S0030-4018(03)01409-3},
	author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka}
}
