@article {3726,
	title = {Bayesian Estimation of Experimental Parameters in Stochastic Inertial Systems: Theory, Simulations, and Experiments with Objects Levitated in Vacuum},
	journal = {Phys. Rev. Appl.},
	volume = {19},
	year = {2023},
	month = {Jun},
	pages = {064059},
	keywords = {LF, MF},
	doi = {10.1103/PhysRevApplied.19.064059},
	url = {https://link.aps.org/doi/10.1103/PhysRevApplied.19.064059},
	author = {{\v S}iler, M. and Svak, V. and Jon{\'a}{\v s}, A. and Simpson, S.H. and Brzobohat{\'y}, O. and Zem{\'a}nek, P.}
}
@article {3410,
	title = {Rapid detection of antibiotic sensitivity of Staphylococcus aureus by Raman tweezers},
	journal = {Eur. Phys. J. Plus},
	volume = {136},
	year = {2021},
	pages = {233},
	keywords = {BF, KF, MF},
	doi = {10.1140/epjp/s13360-021-01152-1},
	url = {https://doi.org/10.1140/epjp/s13360-021-01152-1},
	author = {Bernatov{\'a}, S. and K. Rebro{\v s}ov{\'a} and Pil{\'a}t, Z. and M. {\v S}er{\'y} and Gjevik, A. and Samek, O. and Je{\v z}ek, J. and {\v S}iler, M. and Kizovsk{\'y}, M. and Klementov{\'a}, T. and Hol{\'a}, V. and F. R{\r u}{\v z}i{\v c}ka and Zem{\'a}nek, P.}
}
@article { BrzobohatyACSPHOT19,
	title = {Tunable Soft-Matter Optofluidic Waveguides Assembled by Light},
	journal = {ACS Phot.},
	volume = {6},
	year = {2019},
	pages = {403-410},
	keywords = {LF, MF},
	doi = {10.1021/acsphotonics.8b01331},
	author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and A. Jon{\'a}{\v s} and M {\v S}iler and J. Ka{\v n}ka and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	keywords = {BF, MF},
	doi = {10.3390/s18103212},
	author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek}
}
@article {SilerPRL18,
	title = {Diffusing up the Hill: Dynamics and Equipartition in Highly Unstable Systems},
	journal = {Phys. Rev. Lett.},
	volume = {121},
	year = {2018},
	pages = {23601},
	keywords = {LF, MF},
	doi = {10.1103/PhysRevLett.121.230601},
	author = {M {\v S}iler and Ornigotti, L. and Oto Brzobohat{\'y} and P J{\'a}kl and Artem Ryabov and Holubec, V. and P. Zem{\'a}nek and Radim Filip}
}
@article { LeiteNP18,
	title = {Three-dimensional holographic optical manipulation through a high-numerical-aperture soft-glass multimode fibre},
	journal = {Nature Photon.},
	volume = {12},
	year = {2018},
	pages = {33{\textendash}39},
	keywords = {KF, MF},
	doi = {10.1038/s41566-017-0053-8},
	author = {I.T. Leite and S. Turtaev and Xin Jiang and M {\v S}iler and Alfred Cuschieri and Philip St. J. Russell and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r}
}
@article {SvakNC18,
	title = {Transverse spin forces and non-equilibrium particle dynamics in a circularly polarized vacuum optical trap},
	journal = {Nature Commun.},
	volume = {9},
	year = {2018},
	pages = {5453},
	keywords = {LF, MF},
	doi = {10.1038/s41467-018-07866-8},
	author = {Vojtech Svak and Oto Brzobohat{\'y} and M {\v S}iler and P J{\'a}kl and J. Ka{\v n}ka and P. Zem{\'a}nek and S. H. Simpson}
}
@article {RebrosovsaFB17,
	title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy},
	journal = {Future Microbiology},
	volume = {12},
	year = {2017},
	pages = {10},
	keywords = {BF, MF},
	doi = {10.2217/fmb-2016-0224},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article { KarasekOL17,
	title = {Dynamics of an optically bound structure made of particles of unequal sizes},
	journal = {Opt. Lett.},
	volume = {42},
	number = {7},
	year = {2017},
	pages = {1436-1439},
	keywords = {LF, MF},
	issn = {0146-9592},
	doi = {10.1364/OL.42.001436},
	author = {V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article {HrubanovaMM17,
	title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy},
	journal = {Microscopy and Microanalysis},
	volume = {23},
	year = {2017},
	pages = {S1},
	keywords = {BF, MF},
	doi = {10.1017/S1431927617006456},
	author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek}
}
@article {RebrosovaSR17,
	title = {Rapid identification of staphylococci by Raman spectroscopy},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {14846},
	keywords = {BF, MF},
	doi = {10.1038/s41598-017-13940-w},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}}
}
@article { SilerSR17,
	title = {Thermally induced micro-motion by inflection in optical potential},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {1697},
	keywords = {LF, MF},
	issn = {2045-2322},
	doi = {10.1038/s41598-017-01848-4},
	author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and Artem Ryabov and Radim Filip and P. Zem{\'a}nek}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	keywords = {MF},
	doi = {10.1364/OL.41.000870},
	author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article { ZemanekJOpt16,
	title = {Noise-to-signal transition of a Brownian particle in the cubic potential: II. optical trapping geometry},
	journal = {Journal of Optics},
	volume = {18},
	number = {6},
	year = {2016},
	pages = {065402},
	keywords = {MF},
	doi = {10.1088/2040-8978/18/6/065401},
	author = {P. Zem{\'a}nek and M {\v S}iler and Oto Brzobohat{\'y} and P J{\'a}kl and Radim Filip}
}
@article {SamekSENS16,
	title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16},
	journal = {Sensors},
	volume = {16},
	year = {2016},
	pages = {1808},
	keywords = {MF},
	doi = {10.3390/s16111808},
	author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek}
}
@article {BaranekOE15,
	title = {Aberration resistant axial localization using a self-imaging of vortices},
	journal = {Opt. Express},
	volume = {23},
	year = {2015},
	pages = {15316{\textendash}15331},
	keywords = {MF},
	doi = {10.1364/OE.23.015316},
	author = {Michal Bar{\'a}nek and Petr Bouchal and M {\v S}iler and Zden{\v e}k Bouchal}
}
@article { BrzobohatyOE15b,
	title = {Complex rotational dynamics of multiple spheroidal	particles in a circularly polarized, dual beam trap},
	journal = {Opt. Express},
	volume = {23},
	year = {2015},
	pages = {7273-7287},
	keywords = {MF},
	doi = {10.1364/OE.23.007273},
	author = {Oto Brzobohat{\'y} and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P J{\'a}kl and S. H. Simpson and P. Zem{\'a}nek}
}
@article { KrzyzanekMM15,
	title = {Cryo-SEM and Raman Spectroscopy Study of the Involvement of Polyhydroxyalkanoates in Stress Response of Bacteria},
	journal = {Microscopy and Microanalysis},
	volume = {21},
	number = {S3},
	year = {2015},
	pages = {183-184},
	keywords = {MF},
	doi = {10.1017/S1431927615001713},
	author = {V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and O. Samek and S. Obru{\v c}a and I. M{\'a}rov{\'a} and Silva Bernatov{\'a} and M {\v S}iler and P. Zem{\'a}nek}
}
@article { SamekJBO15,
	title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers},
	journal = {J. Biomed. Opt.},
	volume = {20},
	number = {5},
	year = {2015},
	keywords = {MF},
	doi = {10.1117/1.JBO.20.5.051038},
	author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { MlynarikovaSENS15,
	title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy},
	journal = {Sensors},
	volume = {15},
	year = {2015},
	pages = {29635-29647},
	keywords = {MF},
	doi = {10.3390/s151129635},
	author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article { BrzobohatyOE15,
	title = {Non-spherical gold nanoparticles trapped in optical tweezers: shape matters},
	journal = {Opt. Express},
	volume = {23},
	year = {2015},
	pages = {8179-8189},
	keywords = {MF},
	doi = {10.1364/OE.23.008179},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and V{\'\i}t{\v e}zslav Kar{\'a}sek and P. Zem{\'a}nek}
}
@article { SilerJQSRT15,
	title = {Optical trapping in secondary maxima of focused laser beam},
	journal = {J. Quant. Spectrosc. Radiat. Transf.},
	volume = {162},
	year = {2015},
	pages = {114 - 121},
	keywords = {MF},
	doi = {10.1016/j.jqsrt.2015.03.003},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { BrzobohatySR15,
	title = {Three-Dimensional Optical Trapping of a Plasmonic Nanoparticle using Low Numerical Aperture Optical Tweezers},
	journal = {Sci. Rep.},
	volume = {5},
	year = {2015},
	pages = {8106},
	keywords = {MF},
	doi = {10.1038/srep08106},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J. Trojek and Luk{\'a}{\v s} Chv{\'a}tal and V{\'\i}t{\v e}zslav Kar{\'a}sek and Ale{\v s} Pat{\'a}k and Zuzana Pokorn{\'a} and Filip Mika and P. Zem{\'a}nek}
}
@article { SamekIJMC14,
	title = {Candida parapsilosis Biofilm Identification by Raman	Spectroscopy},
	journal = {Int. J. Mol. Sci.},
	volume = {15},
	year = {2014},
	pages = {23924-23935},
	keywords = {MF},
	doi = {10.3390/ijms151223924},
	author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}}
}
@article { JaklOE14,
	title = {Optical sorting of nonspherical and living microobjects in moving interference structures},
	journal = {Opt. Express},
	volume = {22},
	year = {2014},
	pages = {29746-29760},
	keywords = {MF},
	doi = {10.1364/OE.22.029746},
	author = {P J{\'a}kl and Alejandro V. Arzola and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Karen Volke-Sep{\'u}lveda and P. Zem{\'a}nek}
}
@article { BrzobohatyNP13,
	title = {Experimental demonstration of optical transport, sorting and self-arrangement using a {\textquoteleft}tractor beam{\textquoteright}},
	journal = {Nature Photon.},
	volume = {7},
	number = {2},
	year = {2013},
	pages = {123-127},
	keywords = {MF},
	doi = {10.1038/nphoton.2012.332},
	author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	keywords = {MF},
	doi = {10.3390/molecules181113188},
	author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { SilerJQSRT13,
	title = {Metallic nanoparticles in a standing wave: optical force	and heating},
	journal = {J. Quant. Spectrosc. Radiat. Transf.},
	volume = {126},
	year = {2013},
	pages = {84-90},
	keywords = {MF},
	doi = {10.1016/j.jqsrt.2012.10.005},
	author = {M {\v S}iler and Luk{\'a}{\v s} Chv{\'a}tal and P. Zem{\'a}nek}
}
@article { SilerJQSRT13b,
	title = {Optical forces in a non-diffracting vortex beam},
	journal = {J. Quant. Spectrosc. Radiat. Transf.},
	volume = {126},
	year = {2013},
	pages = {78-83},
	keywords = {MF},
	doi = {10.1016/j.jqsrt.2012.08.030},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { BrzobohatyOL13,
	title = {Optical manipulation of aerosol droplets using a	holographic dual and single beam trap},
	journal = {Opt. Lett.},
	volume = {38},
	number = {22},
	year = {2013},
	pages = {4601-4604},
	keywords = {MF},
	doi = {10.1364/OL.38.004601},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { SilerOE12,
	title = {Optical forces induced behavior of a particle in a non-diffracting vortex beam},
	journal = {Opt. Express},
	volume = {20},
	year = {2012},
	pages = {24304-24319},
	keywords = {MF},
	doi = {10.1364/OE.20.024304},
	author = {M {\v S}iler and P J{\'a}kl and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { SilerAPL12,
	title = {Speed enhancement of multi-particle chain in a traveling	standing wave},
	journal = {Appl. Phys. Lett.},
	volume = {100},
	year = {2012},
	pages = {051103},
	keywords = {MF},
	doi = {10.1063/1.3680234},
	author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and P. Zem{\'a}nek}
}
@article { SilerJOPT11,
	title = {Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescent	wave},
	journal = {J. Opt.},
	volume = {13},
	year = {2011},
	pages = {044016:1{\textendash}9},
	keywords = {MF},
	doi = {10.1088/2040-8978/13/4/044016},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { BrzobohatyOE11,
	title = {Static and dynamic behavior of two optically bound	microparticles in a standing wave},
	journal = {Opt. Express},
	volume = {19},
	year = {2011},
	pages = {19613{\textendash}19626},
	keywords = {MF},
	doi = {10.1364/OE.19.019613},
	author = {Oto Brzobohat{\'y} and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and J. Trojek and P. Zem{\'a}nek}
}
@article { BrzobohatyOE10,
	title = {Experimental and theoretical determination of optical	binding forces},
	journal = {Opt. Express},
	volume = {18},
	number = {24},
	year = {2010},
	pages = {25389{\textendash}25402},
	keywords = {MF},
	issn = {1094-4087},
	doi = {10.1364/OE.18.025389},
	author = {Oto Brzobohat{\'y} and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V{\'\i}t{\v e}zslav Kar{\'a}sek and M {\v S}iler and Kishan Dholakia and P. Zem{\'a}nek}
}
@article { SilerNJP10,
	title = {Particle jumps between optical traps in a one-dimensional	optical lattice},
	journal = {New. J. Phys.},
	volume = {12},
	year = {2010},
	pages = {083001:1{\textendash}20},
	keywords = {MF},
	doi = {10.1088/1367-2630/12/8/083001},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article { SilerNJP08,
	title = {Surface delivery of a single nanoparticle under moving	evanescent standing-wave illumination},
	journal = {New. J. Phys.},
	volume = {10},
	year = {2008},
	pages = {113010},
	keywords = {MF},
	issn = {1367-2630},
	doi = {10.1088/1367-2630/10/11/113010},
	author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and A. Jon{\'a}{\v s} and P. Zem{\'a}nek}
}
@article { SilerOC07,
	title = {Optical forces acting on a nanoparticle placed into an interference evanescent field},
	journal = {Opt. Commun.},
	volume = {275},
	year = {2007},
	pages = {409{\textendash}420},
	keywords = {MF},
	doi = {10.1016/j.optcom.2007.03.074},
	author = {M {\v S}iler and P. Zem{\'a}nek}
}
@article {SilerAPB06,
	title = {Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery},
	journal = {Appl. Phys. B},
	volume = {84},
	year = {2006},
	pages = {157{\textendash}165},
	keywords = {MF},
	doi = {10.1007/s00340-006-2235-9},
	author = {M {\v S}iler and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M. {\v S}er{\'y} and P. Zem{\'a}nek}
}
@article {CizmarAPB06,
	title = {An optical nanotrap array movable over a milimetre range},
	journal = {Appl. Phys. B},
	volume = {84},
	year = {2006},
	pages = {197{\textendash}203},
	keywords = {MF},
	doi = {10.1007/s00340-006-2221-2},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M {\v S}iler and P. Zem{\'a}nek}
}
@article {CizmarPRB06,
	title = {Optical sorting and detection of sub-micron objects in a motional standing wave},
	journal = {Phys. Rev. B},
	volume = {74},
	year = {2006},
	pages = {035105:1-6},
	keywords = {MF},
	doi = {10.1103/PhysRevB.74.035105},
	author = {Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and M {\v S}iler and M. {\v S}er{\'y} and P. Zem{\'a}nek and V. Garc{\'e}s-Ch{\'a}vez and Kishan Dholakia}
}
