@article {3728,
	title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering},
	journal = {Biosensors},
	volume = {13},
	year = {2023},
	pages = {182},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios13020182},
	url = {https://www.mdpi.com/2079-6374/13/2/182},
	author = {Bene{\v s}ov{\'a}, Mark{\'e}ta and Bernatov{\'a}, Silvie and Mika, Filip and Pokorn{\'a}, Zuzana and Je{\v z}ek, Jan and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Zem{\'a}nek, Pavel and Pil{\'a}t, Zden{\v e}k}
}
@article {3481,
	title = {Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field},
	journal = {ACS Applied Materials \& Interfaces},
	volume = {13},
	year = {2021},
	month = {OCT 21},
	pages = {50657-50667},
	keywords = {BF, LF, MF},
	doi = {10.1021/acsami.1c11936},
	author = {Jonas, Alexandr and Pil{\'a}t, Zden{\v e}k and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Jedli{\v c}ka, Petr and Aas, Mehdi and Kiraz, Alper and Zem{\'a}nek, Pavel}
}
@article {3417,
	title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris},
	journal = {Biosensors},
	volume = {11},
	year = {2021},
	pages = {115},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios11040115},
	url = {https://www.mdpi.com/2079-6374/11/4/115},
	author = {Kizovsk{\'y}, Martin and Pil{\'a}t, Zden{\v e}k and Mylenko, Mykola and Hrouzek, Pavel and Kuta, Jan and Skoup{\'y}, Radim and Krzy{\v z}{\'a}nek, Vladislav and Hrubanov{\'a}, Kamila and Adamczyk, Olga and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Klementov{\'a}, Tereza and Gjevik, Al{\v z}b{\v e}ta and {\v S}iler, Martin and Samek, Ota and Zem{\'a}nek, Pavel}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	keywords = {BF, MF},
	doi = {10.3390/s18103212},
	author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek}
}
@article { PilatSENS18Ecoli,
	title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {1623},
	keywords = {BF, MF},
	doi = {10.3390/s18051623},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek}
}
@article { HrubanovaSENS18,
	title = {Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy},
	journal = {Sensors},
	volume = {18},
	number = {12},
	year = {2018},
	pages = {4089},
	keywords = {BF, MF},
	doi = {10.3390/s18124089},
	author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and J. Nebes{\'a}{\v r}ov{\'a} and F. R{\r u}{\v z}i{\v c}ka and Z. Pil{\'a}t and O. Samek}
}
@article {PilatSENS17,
	title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System},
	journal = {Sensors},
	volume = {17},
	year = {2017},
	pages = {2640},
	keywords = {BF, MF},
	doi = {10.3390/s17112640},
	author = {Z. Pil{\'a}t and A. Jon{\'a}{\v s} and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article { JonasJOSAB17,
	title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators},
	journal = {J. Opt. Soc. Am. B},
	volume = {34},
	year = {2017},
	pages = {1855-1864},
	keywords = {BF, MF},
	doi = {10.1364/JOSAB.34.001855},
	author = {A. Jon{\'a}{\v s} and Z. Pil{\'a}t and J Je{\v z}ek and Silva Bernatov{\'a} and T. Fo{\v r}t and P. Zem{\'a}nek and Mehdi Aas and Alper Kiraz}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	keywords = {MF},
	doi = {10.1364/OL.41.000870},
	author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	keywords = {MF},
	doi = {10.3390/molecules181113188},
	author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { PilatJPPB13,
	title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment},
	journal = {J. Photochem. Photobiol. B},
	volume = {121},
	year = {2013},
	pages = {27 - 31},
	keywords = {MF},
	doi = {10.1016/j.jphotobiol.2013.02.006},
	author = {Z. Pil{\'a}t and J Je{\v z}ek and M. {\v S}er{\'y} and M. Trt{\'\i}lek and L. Nedbal and P. Zem{\'a}nek}
}
@article {AasOE13,
	title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching},
	journal = {Opt. Express},
	volume = {21},
	number = {18},
	year = {2013},
	pages = {21380-21394},
	keywords = {MF},
	doi = {10.1364/OE.21.021380},
	author = {Mehdi Aas and A. Jon{\'a}{\v s} and Alper Kiraz and Oto Brzobohat{\'y} and J Je{\v z}ek and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article {PorizkaSAB12,
	title = {Application of laser-induced breakdown spectroscopy to the analysis of	algal biomass for industrial biotechnology},
	journal = {Spectrochim. Acta B},
	volume = {74-75},
	year = {2012},
	pages = {169-176},
	keywords = {MF},
	doi = {10.1016/j.sab.2012.06.014},
	author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek}
}
@article { PilatJAP2012,
	title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification},
	journal = {J. Appl. Phycol.},
	volume = {24},
	year = {2012},
	pages = {541-546},
	keywords = {MF},
	doi = {10.1007/s10811-011-9754-4},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek}
}
@article { Samek2010,
	title = {Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo},
	journal = {Sensors},
	volume = {10},
	year = {2010},
	pages = {8635{\textendash}8651},
	keywords = {MF},
	doi = {10.3390/s100908635},
	author = {O. Samek and A. Jon{\'a}{\v s} and Z. Pil{\'a}t and P. Zem{\'a}nek and L. Nedbal and T{\v r}{\'\i}ska, J. and Kotas, P. and M. Trt{\'\i}lek}
}
