@article {4210,
	title = {Optomechanical Probes with Tailored Material and Shape Asymmetry Assembled Using DNA Origami},
	journal = {Nano Letters},
	volume = {26},
	year = {2026},
	pages = {2080{\textendash}2088},
	keywords = {AIF, BF, LF, MF},
	issn = {1530-6984, 1530-6992},
	doi = {10.1021/acs.nanolett.5c05354},
	url = {https://pubs.acs.org/doi/10.1021/acs.nanolett.5c05354},
	author = {Ruiz-Arce, DD and Bene{\v s}ov{\'a}, Mark{\'e}ta and Protiva, V{\'a}clav and Ko{\v c}i{\v s}ek, Jaroslav and Pil{\'a}t, Zden{\v e}k and Je{\v z}ek, Jan and Silhan, Lukas and Zem{\'a}nek, Pavel and Jonas, Alexandr and Sala, Leo}
}
@article {4129,
	title = {Assembly for semi-correlation analysis of samples using cryogenic scanning electron microscopy and cryogenic Raman micro-spectroscopy},
	journal = {MEASUREMENT SCIENCE AND TECHNOLOGY},
	volume = {36},
	year = {2025},
	month = {MAY 31},
	pages = {055903},
	keywords = {BF, MF},
	issn = {0957-0233},
	doi = {10.1088/1361-6501/adc94a},
	author = {Laznicka, Tomas and Kizovsk{\'y}, Martin and Hrubanov{\'a}, Kamila and Je{\v z}ek, Jan and Mrazova, Katerina and Obru{\v c}a, Stanislav and Samek, Ota and Krzy{\v z}{\'a}nek, Vladislav}
}
@article {4130,
	title = {Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions},
	journal = {SENSORS},
	volume = {25},
	year = {2025},
	month = {JUL 26},
	pages = {4629},
	keywords = {BF, MF},
	doi = {10.3390/s25154629},
	author = {Ghazalova, Mona and Modlitbova, Pavlina and Samek, Ota and Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Je{\v z}ek, Jan and Pil{\'a}t, Zden{\v e}k}
}
@conference {3997,
	title = {Design of Setup for Laser Induced Plasma Etching},
	booktitle = {2024 37th International Vacuum Nanoelectronics Conference (IVNC)},
	year = {2024},
	keywords = {AIF, MF},
	doi = {10.1109/IVNC63480.2024.10652276},
	author = {Silhan, Lukas and Novotny, Jan and Plichta, Tom{\'a}{\v s} and Je{\v z}ek, Jan and Vaculik, Ondrej and {\v S}er{\'y}, Mojm{\'\i}r}
}
@article {3728,
	title = {SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering},
	journal = {Biosensors},
	volume = {13},
	year = {2023},
	pages = {182},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios13020182},
	url = {https://www.mdpi.com/2079-6374/13/2/182},
	author = {Bene{\v s}ov{\'a}, Mark{\'e}ta and Bernatov{\'a}, Silvie and Mika, Filip and Pokorn{\'a}, Zuzana and Je{\v z}ek, Jan and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Rebro{\v s}ov{\'a}, Katar{\'\i}na and Zem{\'a}nek, Pavel and Pil{\'a}t, Zden{\v e}k}
}
@article {3754,
	title = {Synchronization of spin-driven limit cycle oscillators optically levitated in vacuum},
	journal = {Nature Communications},
	volume = {14},
	year = {2023},
	pages = {5441},
	keywords = {LF, MF},
	doi = {10.1038/s41467-023-41129-5},
	url = {https://doi.org/10.1038/s41467-023-41129-5},
	author = {Brzobohat{\'y}, Oto and Ducha{\v n}, Martin and J{\'a}kl, Petr and Je{\v z}ek, Jan and {\v S}iler, Martin and Zem{\'a}nek, Pavel and Simpson, Stephen H.}
}
@article {3503,
	title = {Endoscopic Imaging Using a Multimode Optical Fibre Calibrated with Multiple Internal References},
	journal = {Photonics},
	volume = {9},
	year = {2022},
	pages = {37},
	keywords = {BF, KF, MF},
	doi = {10.3390/photonics9010037},
	url = {https://www.mdpi.com/2304-6732/9/1/37},
	author = {J{\'a}kl, Petr and {\v S}iler, Martin and Je{\v z}ek, Jan and Cifuentes, Angel and Tr{\"a}g{\r a}rdh, Johanna and Zem{\'a}nek, Pavel and Cizmar, Tomas}
}
@article {3589,
	title = {In Vivo Contrast Imaging of Rat Heart with Carbon Dioxide Foam},
	journal = {SENSORS},
	volume = {22},
	year = {2022},
	month = {JUL},
	pages = {5124},
	keywords = {BF, MF},
	doi = {10.3390/s22145124},
	author = {Karalko, Anton and Kesa, Peter and Jelinek, Frantisek and Sefc, Ludek and Je{\v z}ek, Jan and Zem{\'a}nek, Pavel and Grus, Tomas}
}
@article {3481,
	title = {Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field},
	journal = {ACS Applied Materials \& Interfaces},
	volume = {13},
	year = {2021},
	month = {OCT 21},
	pages = {50657-50667},
	keywords = {BF, LF, MF},
	doi = {10.1021/acsami.1c11936},
	author = {Jonas, Alexandr and Pil{\'a}t, Zden{\v e}k and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Jedli{\v c}ka, Petr and Aas, Mehdi and Kiraz, Alper and Zem{\'a}nek, Pavel}
}
@article {3417,
	title = {Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris},
	journal = {Biosensors},
	volume = {11},
	year = {2021},
	pages = {115},
	keywords = {BF, MF},
	issn = {2079-6374},
	doi = {10.3390/bios11040115},
	url = {https://www.mdpi.com/2079-6374/11/4/115},
	author = {Kizovsk{\'y}, Martin and Pil{\'a}t, Zden{\v e}k and Mylenko, Mykola and Hrouzek, Pavel and Kuta, Jan and Skoup{\'y}, Radim and Krzy{\v z}{\'a}nek, Vladislav and Hrubanov{\'a}, Kamila and Adamczyk, Olga and Je{\v z}ek, Jan and Bernatov{\'a}, Silvie and Klementov{\'a}, Tereza and Gjevik, Al{\v z}b{\v e}ta and {\v S}iler, Martin and Samek, Ota and Zem{\'a}nek, Pavel}
}
@article {3189,
	title = {Identification of ability to form biofilm in Candida parapsilosis and Staphylococcus epidermidis by Raman spectroscopy},
	journal = {Future Microbiology},
	volume = {14},
	year = {2019},
	pages = {509-517},
	abstract = {<p>Aim: Finding rapid, reliable diagnostic methods is a big challenge in clinical microbiology. Raman spectroscopy is an optical method used for multiple applications in scientific fields including microbiology. This work reports its potential in identifying biofilm positive strains of Candida parapsilosis and Staphylococcus epidermidis. Materials \&amp; methods: We tested 54 S. epidermidis strains (23 biofilm positive, 31 negative) and 51 C. parapsilosis strains (27 biofilm positive, 24 negative) from colonies on Mueller-Hinton agar plates, using Raman spectroscopy. Results: The accuracy was 98.9\% for C. parapsilosis and 96.1\% for S. epidermidis. Conclusion: The method showed great potential for identifying biofilm positive bacterial and yeast strains. We suggest that Raman spectroscopy might become a useful aid in clinical diagnostics.</p>},
	keywords = {BF, KF, MF},
	doi = {10.2217/fmb-2018-0297},
	url = {https://doi.org/10.2217/fmb-2018-0297},
	author = {Rebro{\v s}ov{\'a}, Katar{\'\i}na and {\v S}iler, Martin and Samek, Ota and R{\r u}{\v z}i{\v c}ka, Filip and Bernatov{\'a}, Silvie and Je{\v z}ek, Jan and Zem{\'a}nek, Pavel and Hol{\'a}, Veronika}
}
@article {3104,
	title = {Wavelength-Dependent Optical Force Aggregation of Gold Nanorods for SERS in a Microfluidic Chip},
	journal = {J. Phys. Chem. C},
	volume = {123},
	year = {2019},
	pages = {5608-5615},
	keywords = {BF, MF},
	doi = {10.1021/acs.jpcc.8b12493},
	author = {Bernatov{\'a}, Silvie and Donato, Maria Grazia and Je{\v z}ek, Jan and Pil{\'a}t, Z. and Samek, Ota and Magazzu, Alessandro and Marag{\`o}, Onofrio M. and Zem{\'a}nek, Pavel and Gucciardi, Pietro G.}
}
