@article { BrzobohatyACSPHOT19,
	title = {Tunable Soft-Matter Optofluidic Waveguides Assembled by Light},
	journal = {ACS Phot.},
	volume = {6},
	year = {2019},
	pages = {403-410},
	keywords = {LF, MF},
	doi = {10.1021/acsphotonics.8b01331},
	author = {Oto Brzobohat{\'y} and Luk{\'a}{\v s} Chv{\'a}tal and A. Jon{\'a}{\v s} and M {\v S}iler and J. Ka{\v n}ka and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article { PilatSENS18SERS,
	title = {Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {3212},
	keywords = {BF, MF},
	doi = {10.3390/s18103212},
	author = {Z. Pil{\'a}t and Kizovsk{\'y}, M. and J Je{\v z}ek and Kr{\'a}tk{\'y}, S. and Sobota, J. and M {\v S}iler and O. Samek and Bury{\v s}ka, T. and Va{\v n}{\'a}{\v c}ek, P. and Damborsk{\'y}, J. and Prokop, Z. and P. Zem{\'a}nek}
}
@article { DamkovaLSA18,
	title = {Enhancement of the {\textquoteleft}tractor-beam{\textquoteright} pulling force on an optically bound structure},
	journal = {Light: Sci. Appl.},
	volume = {7},
	year = {2018},
	pages = {17135},
	keywords = {LF, MF},
	doi = {10.1038/lsa.2017.135},
	author = {Damkov{\'a}, Jana and Luk{\'a}{\v s} Chv{\'a}tal and J Je{\v z}ek and Oulehla, Jindrich and Oto Brzobohat{\'y} and P. Zem{\'a}nek}
}
@article { PilatSENS18Ecoli,
	title = {Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress},
	journal = {Sensors},
	volume = {18},
	year = {2018},
	pages = {1623},
	keywords = {BF, MF},
	doi = {10.3390/s18051623},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and Kirchhoff, J. and Tannert, A. and Neugebauer, U. and O. Samek and P. Zem{\'a}nek}
}
@article {RebrosovsaFB17,
	title = {Differentiation between Staphylococcus aureus and Staphylococcus epidermidis strains using Raman spectroscopy},
	journal = {Future Microbiology},
	volume = {12},
	year = {2017},
	pages = {10},
	keywords = {BF, MF},
	doi = {10.2217/fmb-2016-0224},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and Silva Bernatov{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article {PilatSENS17,
	title = {Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System},
	journal = {Sensors},
	volume = {17},
	year = {2017},
	pages = {2640},
	keywords = {BF, MF},
	doi = {10.3390/s17112640},
	author = {Z. Pil{\'a}t and A. Jon{\'a}{\v s} and J Je{\v z}ek and P. Zem{\'a}nek}
}
@article {HrubanovaMM17,
	title = {Morphological and Production Changes in Planktonic and Biofilm Cells Monitored Using SEM and Raman Spectroscopy},
	journal = {Microscopy and Microanalysis},
	volume = {23},
	year = {2017},
	pages = {S1},
	keywords = {BF, MF},
	doi = {10.1017/S1431927617006456},
	author = {K. Hrubanov{\'a} and V. Krzy{\v z}{\'a}nek and O. Samek and R. Skoup{\'y} and M {\v S}iler and J Je{\v z}ek and S. Obru{\v c}a and P. Zem{\'a}nek}
}
@article {RebrosovaSR17,
	title = {Rapid identification of staphylococci by Raman spectroscopy},
	journal = {Sci. Rep.},
	volume = {7},
	year = {2017},
	pages = {14846},
	keywords = {BF, MF},
	doi = {10.1038/s41598-017-13940-w},
	author = {K. Rebro{\v s}ov{\'a} and M {\v S}iler and O. Samek and F. R{\r u}{\v z}i{\v c}ka and S. Bernatov{\'a} and V. Hol{\'a} and J Je{\v z}ek and P. Zem{\'a}nek and J. Sokolov{\'a} and P. Petr{\'a}{\v s}}
}
@article { JonasJOSAB17,
	title = {Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators},
	journal = {J. Opt. Soc. Am. B},
	volume = {34},
	year = {2017},
	pages = {1855-1864},
	keywords = {BF, MF},
	doi = {10.1364/JOSAB.34.001855},
	author = {A. Jon{\'a}{\v s} and Z. Pil{\'a}t and J Je{\v z}ek and Silva Bernatov{\'a} and T. Fo{\v r}t and P. Zem{\'a}nek and Mehdi Aas and Alper Kiraz}
}
@article { SilerOL16,
	title = {Direct measurement of the temperature profile close to an optically trapped absorbing particle},
	journal = {Opt. Lett.},
	volume = {41},
	year = {2016},
	pages = {870-873},
	keywords = {MF},
	doi = {10.1364/OL.41.000870},
	author = {M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article {SamekSENS16,
	title = {Quantitative Raman Spectroscopy Analysis of Polyhydroxyalkanoates Produced by Cupriavidus necator H16},
	journal = {Sensors},
	volume = {16},
	year = {2016},
	pages = {1808},
	keywords = {MF},
	doi = {10.3390/s16111808},
	author = {O. Samek and S. Obru{\v c}a and M {\v S}iler and P. Sedl{\'a}{\v c}ek and Pavla Bene{\v s}ov{\'a} and D. Ku{\v c}era and I. M{\'a}rov{\'a} and J Je{\v z}ek and Silva Bernatov{\'a} and P. Zem{\'a}nek}
}
@article { SamekJBO15,
	title = {Identification of individual biofilm-forming bacterial cells using Raman tweezers},
	journal = {J. Biomed. Opt.},
	volume = {20},
	number = {5},
	year = {2015},
	keywords = {MF},
	doi = {10.1117/1.JBO.20.5.051038},
	author = {O. Samek and Silva Bernatov{\'a} and J Je{\v z}ek and M {\v S}iler and M. {\v S}er{\'y} and V. Krzy{\v z}{\'a}nek and K. Hrubanov{\'a} and P. Zem{\'a}nek and V. Hol{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { MlynarikovaSENS15,
	title = {Influence of Culture Media on Microbial Fingerprints Using Raman Spectroscopy},
	journal = {Sensors},
	volume = {15},
	year = {2015},
	pages = {29635-29647},
	keywords = {MF},
	doi = {10.3390/s151129635},
	author = {K. Mlynarikov{\'a} and O. Samek and Silva Bernatov{\'a} and F. R{\r u}{\v z}i{\v c}ka and J Je{\v z}ek and A. Haronikov{\'a} and M {\v S}iler and P. Zem{\'a}nek and V. Hol{\'a}}
}
@article { SamekMM15,
	title = {SEM and Raman Spectroscopy Applied to Biomass Analysis for Application in the Field of Biofuels and Food Industry},
	journal = {Microscopy and Microanalysis},
	volume = {21},
	year = {2015},
	pages = {1775-1776},
	keywords = {MF},
	doi = {10.1017/S1431927615009654},
	author = {O. Samek and A. Haronikov{\'a} and N. Va{\v s}kovicov{\'a} and K. Hrubanov{\'a} and J Je{\v z}ek and I. M{\'a}rov{\'a} and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek}
}
@article { SamekIJMC14,
	title = {Candida parapsilosis Biofilm Identification by Raman	Spectroscopy},
	journal = {Int. J. Mol. Sci.},
	volume = {15},
	year = {2014},
	pages = {23924-23935},
	keywords = {MF},
	doi = {10.3390/ijms151223924},
	author = {O. Samek and K. Mlynarikov{\'a} and Silva Bernatov{\'a} and J Je{\v z}ek and V. Krzy{\v z}{\'a}nek and M {\v S}iler and P. Zem{\'a}nek and F. R{\r u}{\v z}i{\v c}ka and V. Hol{\'a} and M. Mahelov{\'a}}
}
@article { BernatovaMol13,
	title = {Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy},
	journal = {Molecules},
	volume = {18},
	year = {2013},
	pages = {13188-13199},
	keywords = {MF},
	doi = {10.3390/molecules181113188},
	author = {Silva Bernatov{\'a} and O. Samek and Z. Pil{\'a}t and M. {\v S}er{\'y} and J Je{\v z}ek and P J{\'a}kl and M {\v S}iler and V. Krzy{\v z}{\'a}nek and P. Zem{\'a}nek and V. Hol{\'a} and M. Dvo{\v r}{\'a}{\v c}kov{\'a} and F. R{\r u}{\v z}i{\v c}ka}
}
@article { BrzobohatyOL13,
	title = {Optical manipulation of aerosol droplets using a	holographic dual and single beam trap},
	journal = {Opt. Lett.},
	volume = {38},
	number = {22},
	year = {2013},
	pages = {4601-4604},
	keywords = {MF},
	doi = {10.1364/OL.38.004601},
	author = {Oto Brzobohat{\'y} and M {\v S}iler and J Je{\v z}ek and P J{\'a}kl and P. Zem{\'a}nek}
}
@article { PilatJPPB13,
	title = {Optical trapping of microalgae at 735{\textendash}1064 nm: Photodamage assessment},
	journal = {J. Photochem. Photobiol. B},
	volume = {121},
	year = {2013},
	pages = {27 - 31},
	keywords = {MF},
	doi = {10.1016/j.jphotobiol.2013.02.006},
	author = {Z. Pil{\'a}t and J Je{\v z}ek and M. {\v S}er{\'y} and M. Trt{\'\i}lek and L. Nedbal and P. Zem{\'a}nek}
}
@article {AasOE13,
	title = {Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching},
	journal = {Opt. Express},
	volume = {21},
	number = {18},
	year = {2013},
	pages = {21380-21394},
	keywords = {MF},
	doi = {10.1364/OE.21.021380},
	author = {Mehdi Aas and A. Jon{\'a}{\v s} and Alper Kiraz and Oto Brzobohat{\'y} and J Je{\v z}ek and Z. Pil{\'a}t and P. Zem{\'a}nek}
}
@article {PorizkaSAB12,
	title = {Application of laser-induced breakdown spectroscopy to the analysis of	algal biomass for industrial biotechnology},
	journal = {Spectrochim. Acta B},
	volume = {74-75},
	year = {2012},
	pages = {169-176},
	keywords = {MF},
	doi = {10.1016/j.sab.2012.06.014},
	author = {P. Po{\v r}{\'\i}zka and D. Proch{\'a}zka and Z. Pil{\'a}t and Kraj{\v c}arov{\'a}, L. and J. Kaiser and Malina, R. and J. Novotn{\'y} and P. Zem{\'a}nek and J Je{\v z}ek and M. {\v S}er{\'y} and Silva Bernatov{\'a} and V. Krzy{\v z}{\'a}nek and Dobransk{\'a}, K. and K. Novotn{\'y} and M. Trt{\'\i}lek and O. Samek}
}
@article { PilatJAP2012,
	title = {Raman microspectroscopy of algal lipid bodies: beta-carotene quantification},
	journal = {J. Appl. Phycol.},
	volume = {24},
	year = {2012},
	pages = {541-546},
	keywords = {MF},
	doi = {10.1007/s10811-011-9754-4},
	author = {Z. Pil{\'a}t and Silva Bernatov{\'a} and J Je{\v z}ek and M. {\v S}er{\'y} and O. Samek and P. Zem{\'a}nek and L. Nedbal and M. Trt{\'\i}lek}
}
@article { JaklJOPAA07,
	title = {Axial optical trap stiffness influenced by retro-reflected beam},
	journal = {J. Opt. A: Pure Appl. Opt.},
	volume = {9},
	number = {8, Sp. Iss. SI},
	year = {2007},
	pages = {S251{\textendash}S255},
	keywords = {MF},
	issn = {1464-4258},
	doi = {10.1088/1464-4258/9/8/S19},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka and P. Zem{\'a}nek}
}
@article { JaklJOAM07,
	title = {Opto-fluidic micromanipulation system based on integrated polymer waveguides},
	journal = {J. Optoel Adv. Mater.},
	volume = {9},
	year = {2007},
	pages = {2148-2151},
	keywords = {MF},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and P. Zem{\'a}nek and Ormos, P. and Valkai, S. and Kelemen, L.}
}
@article {JezekOE06,
	title = {Formation of long and thin polymer fiber using nondiffracting beam},
	journal = {Opt. Express},
	volume = {14},
	year = {2006},
	pages = {8506-8515},
	keywords = {MF},
	doi = {10.1364/OE.14.008506},
	author = {J Je{\v z}ek and Tom{\'a}{\v s} {\v C}i{\v z}m{\'a}r and V. Ned{\v e}la and P. Zem{\'a}nek}
}
@article {JaklJMO03,
	title = {Behaviour of an optically trapped probe approaching a dielectric interface},
	journal = {J Mod. Optics},
	volume = {50},
	year = {2003},
	pages = {1615-1625},
	keywords = {MF},
	doi = {10.1080/09500340308235235},
	author = {P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and A. Jon{\'a}{\v s} and M. Li{\v s}ka and P. Zem{\'a}nek}
}
@article {ZemanekOPTCOMM03,
	title = {Theoretical comparison of optical traps created by standing wave and single beam},
	journal = {Opt. Commun.},
	volume = {220},
	year = {2003},
	pages = {401-412},
	keywords = {MF},
	doi = {10.1016/S0030-4018(03)01409-3},
	author = {P. Zem{\'a}nek and A. Jon{\'a}{\v s} and P J{\'a}kl and M. {\v S}er{\'y} and J Je{\v z}ek and M. Li{\v s}ka}
}
