Ruiz-Arce DD, Bene?ová M, Protiva V, Ko?i?ek J, Pilát Z, Je?ek J, Silhan L, Zemánek P, Jonas A, Sala L. Optomechanical Probes with Tailored Material and Shape Asymmetry Assembled Using DNA Origami. Nano Letters, 26, 2080?2088 (2026).

Coca-Lopez N, Alcolea-Rodriguez V, Bañares MA, Brockhauser S, Gorenflot J, Henderson A, Hildebrandt R, Jeliazkova N, Kochev N, Diz ELozano, Pilát Z, Polli D, Strömert P, Sturm C, Vanna R, Portela R. Artificial Intelligence-Powered Raman Spectroscopy through Open Science and FAIR Principles. ACS Nano, 19, 38189?38218 (2025).

Ghazalova M, Modlitbova P, Samek O, Rebro?ová K, ?iler M, Je?ek J, Pilát Z. Surface-Enhanced Raman Spectroscopy for Adenine Detection in Five Selected Bacterial Strains Under Stress Conditions. SENSORS, 25, 4629 (2025).

Lee KSoo, Landry Z, Athar A, Alcolombri U, Ayutthaya PPramoj Na, Berry D, de Bettignies P, Cheng J-X, Csucs G, Cui L, Deckert V, Dieing T, Dionne J, Doskocil O, D'Souza G, Garcia-Timermans C, Gierlinger N, Goda K, Hatzenpichler R, Henshaw RJ, Huang WE, Iermak I, Ivleva NP, Kneipp J, Kubryk P, Kuesel K, Lee TKwon, Lee SSik, Ma B, Martinez-Perez C, Matousek P, Meckenstock RU, Min W, Mojzes P, Mueller O, Kumar N, Nielsen PHalkjaer, Notingher I, Palatinszky M, Pereira FC, Pezzotti G, Pilát Z, Plesinger F, Popp J, Probst AJ, Riva A, Saleh AAE, Samek O, Sapers HM, Schubert OT, Stubbusch AKM, Tadesse LF, Taylor GT, Wagner M, Wang J, Yin H, Yue Y, Zenobi R, Zini J, Sarkans U, Stocker R. MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data. NATURE MICROBIOLOGY, 9, (2024).

Bene?ová M, Bernatová S, Mika F, Pokorná Z, Je?ek J, ?iler M, Samek O, R??i?ka F, Rebro?ová K, Zemánek P, Pilát Z. SERS-Tags: Selective Immobilization and Detection of Bacteria by Strain-Specific Antibodies and Surface-Enhanced Raman Scattering. Biosensors, 13, 182 (2023).

Jonas A, Pilát Z, Je?ek J, Bernatová S, Jedli?ka P, Aas M, Kiraz A, Zemánek P. Optically transportable optofluidic microlasers with liquid crystal cavities tuned by the electric field. ACS Applied Materials & Interfaces, 13, 50657?50667 (2021).

Kizovský M, Pilát Z, Mylenko M, Hrouzek P, Kuta J, Skoupý R, Krzy?ánek V, Hrubanová K, Adamczyk O, Je?ek J, Bernatová S, Klementová T, Gjevik A, ?iler M, Samek O, Zemánek P. Raman Microspectroscopic Analysis of Selenium Bioaccumulation by Green Alga Chlorella vulgaris. Biosensors, 11, 115 (2021).

Pilát Z, Kizovský M, Je?ek J, Krátký S, Sobota J, ?iler M, Samek O, Bury?ka T, Va?á?ek P, Damborský J, Prokop Z, Zemánek P. Detection of chloroalkanes by surface-enhanced raman spectroscopy in microfluidic chips. Sensors, 18, 3212 (2018).

Pilát Z, Bernatová S, Je?ek J, Kirchhoff J, Tannert A, Neugebauer U, Samek O, Zemánek P. Microfluidic Cultivation and Laser Tweezers Raman Spectroscopy of E-coli under Antibiotic Stress. Sensors, 18, 1623 (2018).

Hrubanová K, Krzy?ánek V, Nebesá?ová J, R??i?ka F, Pilát Z, Samek O. Monitoring Candida parapsilosis and Staphylococcus epidermidis Biofilms by a Combination of Scanning Electron Microscopy and Raman Spectroscopy. Sensors, 18, 4089 (2018).

Pilát Z, Joná? A, Je?ek J, Zemánek P. Effects of Infrared Optical Trapping on Saccharomyces cerevisiae in a Microfluidic System. Sensors, 17, 2640 (2017).

Joná? A, Pilát Z, Je?ek J, Bernatová S, Fo?t T, Zemánek P, Aas M, Kiraz A. Thermal tuning of spectral emission from optically trapped liquid-crystal droplet resonators. J. Opt. Soc. Am. B, 34, 1855-1864 (2017).

?iler M, Je?ek J, Jákl P, Pilát Z, Zemánek P. Direct measurement of the temperature profile close to an optically trapped absorbing particle. Opt. Lett., 41, 870-873 (2016).

Bernatová S, Samek O, Pilát Z, ?erý M, Je?ek J, Jákl P, ?iler M, Krzy?ánek V, Zemánek P, Holá V, Dvo?á?ková M, R??i?ka F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).

Pilát Z, Je?ek J, ?erý M, Trtílek M, Nedbal L, Zemánek P. Optical trapping of microalgae at 735?1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).

Aas M, Joná? A, Kiraz A, Brzobohatý O, Je?ek J, Pilát Z, Zemánek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).

Po?ízka P, Procházka D, Pilát Z, Kraj?arová L, Kaiser J, Malina R, Novotný J, Zemánek P, Je?ek J, ?erý M, Bernatová S, Krzy?ánek V, Dobranská K, Novotný K, Trtílek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis ofalgal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).

Pilát Z, Bernatová S, Je?ek J, ?erý M, Samek O, Zemánek P, Nedbal L, Trtílek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).

Samek O, Joná? A, Pilát Z, Zemánek P, Nedbal L, T?íska J, Kotas P, Trtílek M. Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo. Sensors, 10, 8635?8651 (2010).