Silhan L, Arregi JAnder, Plichta T, Vaculik O, Novotny J, ?erý M. Compact vacuum setup for laser induced plasma etching with optical emission spectrum monitoring. Journal of Vacuum Science & Technology B, 43, 034202 (2025).

Silhan L, Novotny J, Plichta T, Je?ek J, Vaculik O, ?erý M. Design of Setup for Laser Induced Plasma Etching, 2024 37th International Vacuum Nanoelectronics Conference (IVNC), 2024.

Tomori Z, Ke?a P, Nikorovi? M, Ka?ka J, Jákl P, ?erý M, Bernatová S, Valu?ová E, Antalík M, Zemánek P. Holographic Raman tweezers controlled by Multimodal Natural User Interface. J. Opt., 18, 015602:1-9 (2016).

Samek O, Bernatová S, Je?ek J, ?iler M, ?erý M, Krzy?ánek V, Hrubanová K, Zemánek P, Holá V, R??i?ka F. Identification of individual biofilm-forming bacterial cells using Raman tweezers. J. Biomed. Opt., 20, (2015).

Hrubanová K, Bernatová S, Samek O, ?erý M, Zemánek P, Nebesá?ová J, R??i?ka F, Krzy?ánek V. Monitoring of Multilayered Bacterial Biofilm Morphology by Cryo-SEM for Raman Spectroscopy Measurements. Microscopy and Microanalysis, 21, 187-188 (2015).

Bernatová S, Samek O, Pilát Z, ?erý M, Je?ek J, Jákl P, ?iler M, Krzy?ánek V, Zemánek P, Holá V, Dvo?á?ková M, R??i?ka F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).

Tomori Z, Antalík M, Ke?a P, Ka?ka J, Jákl P, ?erý M, Bernatová S, Zemánek P. Holographic Raman tweezers controlled by hand gestures and voice commands. Optics and Photonics Journal, 3, 331-336 (2013).

Pilát Z, Je?ek J, ?erý M, Trtílek M, Nedbal L, Zemánek P. Optical trapping of microalgae at 735?1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).

Po?ízka P, Procházka D, Pilát Z, Kraj?arová L, Kaiser J, Malina R, Novotný J, Zemánek P, Je?ek J, ?erý M, Bernatová S, Krzy?ánek V, Dobranská K, Novotný K, Trtílek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis ofalgal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).

Pilát Z, Bernatová S, Je?ek J, ?erý M, Samek O, Zemánek P, Nedbal L, Trtílek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).

Jákl P, ?i?már T, ?erý M, Zemánek P. Static optical sorting in a laser interference field. Appl. Phys. Lett., 92, 161110:1?3 (2008).

Jákl P, ?erý M, Je?ek J, Li?ka M, Zemánek P. Axial optical trap stiffness influenced by retro-reflected beam. J. Opt. A: Pure Appl. Opt., 9, S251?S255 (2007).

Jákl P, ?erý M, Je?ek J, Zemánek P, Ormos P, Valkai S, Kelemen L. Opto-fluidic micromanipulation system based on integrated polymer waveguides. J. Optoel Adv. Mater., 9, 2148-2151 (2007).

?iler M, ?i?már T, ?erý M, Zemánek P. Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery. Appl. Phys. B, 84, 157?165 (2006).

?i?már T, ?iler M, ?erý M, Zemánek P, Garcés-Chávez V, Dholakia K. Optical sorting and detection of sub-micron objects in a motional standing wave. Phys. Rev. B, 74, 035105:1-6 (2006).

Jákl P, ?erý M, Je?ek J, Joná? A, Li?ka M, Zemánek P. Behaviour of an optically trapped probe approaching a dielectric interface. J Mod. Optics, 50, 1615-1625 (2003).

Zemánek P, Joná? A, Jákl P, ?erý M, Je?ek J, Li?ka M. Theoretical comparison of optical traps created by standing wave and single beam. Opt. Commun., 220, 401-412 (2003).