Publications

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2015
Box S, Debono L, Phillips DB, Simpson SH. Transitional behavior in hydrodynamically coupled oscillators. Phys. Rev. E, 91, 022916 (2015).
2014
Pořízka P, Procházková P, Procházka D, Sládková L, Novotný J, Petrilak M, Brada M, Samek O, Pilát Z, Zemánek P, Adam V, Kizek R, Novotný J, Kaiser J. Algal Biomass Analysis by Laser-Based Analytical Techniques—A Review. Sensors, 14, 17725-17752 (2014).
Samek O, Mlynariková K, Bernatová S, Ježek J, Krzyžánek V, Šiler M, Zemánek P, Růžička F, Holá V, Mahelová M. Candida parapsilosis Biofilm Identification by Raman Spectroscopy. Int. J. Mol. Sci., 15, 23924-23935 (2014).
Jákl P, Arzola AV, Šiler M, Chvátal L, Volke-Sepúlveda K, Zemánek P. Optical sorting of nonspherical and living microobjects in moving interference structures. Opt. Express, 22, 29746-29760 (2014).
Arzola AV, Jákl P, Chvátal L, Zemánek P. Rotation, oscillation and hydrodynamic synchronization of optically trapped oblate spheroidal microparticles. Opt. Express, 22, 16207-16221 (2014).
2013
Arzola AV, Volke-Sepúlveda K, Mateos JL. Dynamical analysis of an optical rocking ratchet: Theory and experiment. Phys. Rev. E, 87, 062910:1-9 (2013).
Brzobohatý O, Karásek V, Šiler M, Chvátal L, Čižmár T, Zemánek P. Experimental demonstration of optical transport, sorting and self-arrangement using a `tractor beam'. Nature Photon., 7, 123-127 (2013).
Bernatová S, Samek O, Pilát Z, Šerý M, Ježek J, Jákl P, Šiler M, Krzyžánek V, Zemánek P, Holá V, Dvořáčková M, Růžička F. Following the mechanisms of bacteriostatic versus bacericidal action using Raman spectroscopy. Molecules, 18, 13188-13199 (2013).
Tomori Z, Antalík M, Keša P, Kaňka J, Jákl P, Šerý M, Bernatová S, Zemánek P. Holographic Raman tweezers controlled by hand gestures and voice commands. Optics and Photonics Journal, 3, 331-336 (2013).
Šiler M, Chvátal L, Zemánek P. Metallic nanoparticles in a standing wave: optical force and heating. J. Quant. Spectrosc. Radiat. Transf., 126, 84-90 (2013).
Šiler M, Zemánek P. Optical forces in a non-diffracting vortex beam. J. Quant. Spectrosc. Radiat. Transf., 126, 78-83 (2013).
Brzobohatý O, Šiler M, Ježek J, Jákl P, Zemánek P. Optical manipulation of aerosol droplets using a holographic dual and single beam trap. Opt. Lett., 38, 4601-4604 (2013).
Pilát Z, Ježek J, Šerý M, Trtílek M, Nedbal L, Zemánek P. Optical trapping of microalgae at 735–1064 nm: Photodamage assessment. J. Photochem. Photobiol. B, 121, 27 - 31 (2013).
Aas M, Jonáš A, Kiraz A, Brzobohatý O, Ježek J, Pilát Z, Zemánek P. Spectral tuning of lasing emission from optofluidic droplet microlasers using optical stretching. Opt. Express, 21, 21380-21394 (2013).
2012
Pořízka P, Procházka D, Pilát Z, Krajčarová L, Kaiser J, Malina R, Novotný J, Zemánek P, Ježek J, Šerý M, Bernatová S, Krzyžánek V, Dobranská K, Novotný K, Trtílek M, Samek O. Application of laser-induced breakdown spectroscopy to the analysis of algal biomass for industrial biotechnology. Spectrochim. Acta B, 74-75, 169-176 (2012).
Trojek J, Chvátal L, Zemánek P. Optical alignment and confinement of an ellipsoidal nanorod in optical tweezers: a theoretical study. J. Opt. Soc. Am. A, 29, 1224–1236 (2012).
Šiler M, Jákl P, Brzobohatý O, Zemánek P. Optical forces induced behavior of a particle in a non-diffracting vortex beam. Opt. Express, 20, 24304-24319 (2012).
Pilát Z, Bernatová S, Ježek J, Šerý M, Samek O, Zemánek P, Nedbal L, Trtílek M. Raman microspectroscopy of algal lipid bodies: beta-carotene quantification. J. Appl. Phycol., 24, 541-546 (2012).
Šiler M, Čižmár T, Zemánek P. Speed enhancement of multi-particle chain in a traveling standing wave. Appl. Phys. Lett., 100, 051103 (2012).
2011
Samek O, Zemánek P, Jonáš A, Telle HH. Characterization of oil-producing microalgae using Raman spectroscopy. Laser Phys. Lett., 8, 701–709 (2011).
Brzobohatý O, Karásek V, Čižmár T, Zemánek P. Dynamic size tuning of multidimensional optically bound matter. Appl. Phys. Lett., 99, 101105 (2011).
Čižmár T, Brzobohatý O, Dholakia K, Zemánek P. The holographic optical micro-manipulation system based on counter-propagating beams. Laser Phys. Lett., 8, 50–56 (2011).
Šiler M, Zemánek P. Parametric study of optical forces acting upon nanoparticles in a single, or a standing, evanescent wave. J. Opt., 13, 044016:1–9 (2011).
Brzobohatý O, Karásek V, Šiler M, Trojek J, Zemánek P. Static and dynamic behavior of two optically bound microparticles in a standing wave. Opt. Express, 19, 19613–19626 (2011).
2010
Jonáš A, De Luca AC, Pesce G, Rusciano G, Sasso A, Caserta S, Guido S, Marrucci G. Diffusive Mixing of Polymers Investigated by Raman Microspectroscopy and Microrheology. Langmuir, 26, 14223-14230 (2010).
Brzobohatý O, Čižmár T, Karásek V, Šiler M, Dholakia K, Zemánek P. Experimental and theoretical determination of optical binding forces. Opt. Express, 18, 25389–25402 (2010).
Dholakia K, Zemánek P. Gripped by light: Optical binding. Rev. Mod. Phys., 82, 1767–1791 (2010).
Šiler M, Zemánek P. Particle jumps between optical traps in a one-dimensional optical lattice. New. J. Phys., 12, 083001:1–20 (2010).
Samek O, Al-Marashi JFM, Telle HH. The potential of Raman spectroscopy for the identification of biofilm formation by Staphylococcus epidermidis. Laser Phys. Lett., 7, 378–383 (2010).
Samek O, Jonáš A, Pilát Z, Zemánek P, Nedbal L, Tříska J, Kotas P, Trtílek M. Raman Microspectroscopy of Individual Algal Cells: Sensing Unsaturation of Storage Lipids in vivo. Sensors, 10, 8635–8651 (2010).
2009
Bartsch TF, Fisinger S, Kochanczyk MD, Huang R, Jonáš A, Florin E-L. Detecting Sequential Bond Formation Using Three-Dimensional Thermal Fluctuation Analysis. Chem. Phys. Chem., 10, 1541-1547 (2009).
Wu P, Huang R, Tischer C, Jonáš A, Florin E-L. Direct Measurement of the Nonconservative Force Field Generated by Optical Tweezers. Phys. Rev. Lett., 103, 108101 (2009).
Trojek J, Karásek V, Zemánek P. Extreme axial optical force in a standing wave achieved by optimized object shape. Opt. Express, 17, 10472–10488 (2009).
Karásek V, Brzobohatý O, Zemánek P. Longitudinal optical binding of several spherical particles studied by the coupled dipole method. J. Opt. A: Pure Appl. Opt., 11, 034009 (2009).
2008
Brzobohatý O, Čižmár T, Zemánek P. High quality quasi-Bessel beam generated by round-tip axicon. Opt. Express, 16, 12688–12700 (2008).
Jonáš A, Zemánek P. Light at work: The use of optical forces for particle manipulation, sorting, and analysis. Electophoresis, 29, 4813–4851 (2008).
Karásek V, Čižmár T, Brzobohatý O, Zemánek P, Garcés-Chávez V, Dholakia K. Long-range one-dimensional longitudinal optical binding. Phys. Rev. Lett., 101, 143601 (2008).
Jákl P, Čižmár T, Šerý M, Zemánek P. Static optical sorting in a laser interference field. Appl. Phys. Lett., 92, 161110:1–3 (2008).
Šiler M, Čižmár T, Jonáš A, Zemánek P. Surface delivery of a single nanoparticle under moving evanescent standing-wave illumination. New. J. Phys., 10, 113010 (2008).
2007
Karásek V, Zemánek P. Analytical description of longitudinal optical binding of two spherical nanoparticles. J. Opt. A: Pure Appl. Opt., 9, S215–S220 (2007).
Jákl P, Šerý M, Ježek J, Liška M, Zemánek P. Axial optical trap stiffness influenced by retro-reflected beam. J. Opt. A: Pure Appl. Opt., 9, S251–S255 (2007).
Dholakia K, MacDonald MP, Zemánek P, Čižmár T. Cellular and colloidal separation using optical forces. Methods in Cell Biology, 82, 467–495 (2007).
Šiler M, Zemánek P. Optical forces acting on a nanoparticle placed into an interference evanescent field. Opt. Commun., 275, 409–420 (2007).
Čižmár T, Zemánek P. Optical tracking of spherical micro-objects in spatially periodic interference fields. Opt. Express, 15, 2262–2272 (2007).
Jákl P, Šerý M, Ježek J, Zemánek P, Ormos P, Valkai S, Kelemen L. Opto-fluidic micromanipulation system based on integrated polymer waveguides. J. Optoel Adv. Mater., 9, 2148-2151 (2007).
Milne G, Dholakia K, McGloin D, Volke-Sepúlveda K, Zemánek P. Transverse particle dynamics in a Bessel beam. Opt. Express, 15, 13972–13987 (2007).
2006
Karásek V, Dholakia K, Zemánek P. Analysis of optical binding in one dimension. Appl. Phys. B, 84, 149–156 (2006).
Ježek J, Čižmár T, Neděla V, Zemánek P. Formation of long and thin polymer fiber using nondiffracting beam. Opt. Express, 14, 8506-8515 (2006).
Šiler M, Čižmár T, Šerý M, Zemánek P. Optical forces generated by evanescent standing waves and their usage for sub-micron particle delivery. Appl. Phys. B, 84, 157–165 (2006).
Čižmár T, Šiler M, Zemánek P. An optical nanotrap array movable over a milimetre range. Appl. Phys. B, 84, 197–203 (2006).

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